Open SheepwormJM opened 11 months ago
Thank you for your feedback
A solution would be to add a bolean option keep_header=true
in the config yaml file. Does it sound fine to you? Or we keep cleaning this kind of stuff manually before running AGAT?
Using the
agat_convert_sp_gff2gtf.pl
to convert a gff3 file to a gtf file I found that the output gtf file had a slightly confusing header:Clearly the
##sequence-region....
and#Gene gene:HCON...
are not needed, but because they're kept it makes the first gene line, a gene on chrX, not chr4, seem wrong at first glance.General (please complete the following information):
To Reproduce
Input gff3 file here: https://parasite.wormbase.org/Haemonchus_contortus_prjeb506/Info/Index/