NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
447 stars 55 forks source link

Removing premature stop codons from gff #387

Closed romseg closed 1 year ago

romseg commented 1 year ago

Dear author,

Is there an option to remove all the features from my gff file flagged as premature stop codons done with agat_sp_flag_premature_stop_codons.pl? I want to translate the gff into amino acids and nucleotides without the premature stop codons entries. Thank you.

Rom

Juke34 commented 1 year ago

Yes you can filter those features out using agat_sp_filter_feature_by_attribute_presence.pl prior to extract/translate the sequences