Possible tabular format for agat_sp_statistics.pl

[KristinaGagalova]

Hi,

Thank you for implementing AGAT, it's very handy for the analysis of gffs

I was wondering if you could implement a tabular format output option that can enable the generation of a table. That can be read in python or R easily. So far I am using a small bash parser which on top of the tool to parse the output that you are providing

This could be a good tabular file output - 3 columns output with one feature per line

• Name of the feature
• Results with isoforms
• Results with shortest isoforms removes

Thank you in advance

[Juke34]

I understand the need, would it be ok with yaml type output instead of tsv?

[KristinaGagalova]

That could work too! I would be able to convert it to tsv