Fix #475 : Added an option to refer a folder of GFF files

NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit

GNU General Public License v3.0

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Fix #475 : Added an option to refer a folder of GFF files #476

Closed IvanUgrin closed 2 months ago

IvanUgrin commented 3 months ago

This patch adds an option to refer a folder of GFF files to the agat_sp_merge_annotations.pl script. It addresses feature request #475

Juke34 commented 3 months ago

Thank you for your involvement. Could you update the regex to recognize gtf and gff file? If there is a way to minimize the external library to use it would be nice. If not the new libraries have to be added in the makefile (and in the bioconda recipe. This is for remember myself)

IvanUgrin commented 3 months ago

Hey, I've added GTF support and also removed the Basename import. I don't think I can remove the other two imports as they are needed to detect the files on a folder level.