search

NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
465 stars 56 forks source link

agat_sp_statistics.pl for outputing whole distribution results as csv format #507

Open Jasminefyh opened 3 weeks ago

Jasminefyh commented 3 weeks ago

Dear authors,

Thank you for providing this excellent tool for genome structure statistics. I have been using the command agat_sp_statistics.pl and found it very helpful for generating distribution plots of genome features, such as exons, introns, and CDS regions.

I am wondering if it is possible to obtain the statistical distribution results as a CSV file, including details like Transcript ID, Transcript Sequence Length, Number of Exons, Total Exon Sequence Length, etc. This would greatly help us in performing additional custom analyses and plotting genome features independently.

I appreciate your time and look forward to your response.

Sincerely,
Jasmine

Juke34 commented 3 weeks ago

The statics can be outputed in yaml. This format is easily parsable computationally. Is is not sufficient for what you want to achieve ?