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NBISweden / AGAT

Another Gtf/Gff Analysis Toolkit
GNU General Public License v3.0
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possible precedence issue #52

Closed markusmoest closed 4 years ago

markusmoest commented 4 years ago

Hi ,

Thanks for providing this resource! I want to optain protein sequences from a gff3 and a genome fasta file. I've installed AGAT using conda and also updated. When running agat_sp_extract_sequences.pl -h, I get the following error: "Possible precedence issue with control flow operator at /home/moestmar/miniconda3/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805." I have just started playing with the script and have not encountered anything unusual yet, but could this issue affect the results I get?

Thanks for your help! Markus

Juke34 commented 4 years ago

This is a warning message left in a previous version of Bioperl. They have removed it in recent Bioperl release. It does not affect the result.

markusmoest commented 4 years ago

Many thanks!