option to flag or remove gene models with short exon (<10 nt)

NBISweden / EMBLmyGFF3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

GNU General Public License v3.0

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option to flag or remove gene models with short exon (<10 nt) #31

Open Juke34 opened 5 years ago

Juke34 commented 5 years ago

mRNA with Short introns (<10 bp) are not accepted for submission. Would be nice to catch those cases. It would be easy to find them looking at the list of coordinates from the mRNA features.

Juke34 commented 5 years ago

As long as it is not implemented within EMBLmyGFF3, using the perl script agat_sp_flag_short_introns.pl from the AGAT repo does the job.