Add Smudgeplot and GenomeScope Modules, and Genome Properties and Prepare Input workflows

NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

https://www.earthbiogenome.org/

GNU General Public License v3.0

10 stars 8 forks source link

Add Smudgeplot and GenomeScope Modules, and Genome Properties and Prepare Input workflows #13

Closed mahesh-panchal closed 2 years ago

mahesh-panchal commented 2 years ago

Add Modules for

KMC_HIST
KMC_DUMP
GENOMESCOPE
SMUDGEPLOT_CUTOFF
SMUDGEPLOT_HETKMERS
SMUDGEPLOT_PLOT

Smudgeplot was separated into multiple modules because of the intertwined nature of the software calls.

A Genome Properties subworkflow was developed as a result. Also a subworkflow for preparing the input was also developed to allow a flexible way of parameterizing input.

Edit: Also updated template to follow nf-core path of module formatting