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NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
https://www.earthbiogenome.org/
GNU General Public License v3.0
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New Module: BUSCO #3

Closed aersoares81 closed 2 years ago

aersoares81 commented 2 years ago

We need a module for busco.

Originally on Rackham it's something like this:

module load bioinfo-tools BUSCO
JOB=$SLURM_ARRAY_TASK_ID

GENOME=input_genome.fasta
PREFIX=for_the_output

run_BUSCO.py -i "${GENOME}" -m geno -l vertebrata_odb10 -o "${PREFIX}"
mahesh-panchal commented 2 years ago

This may be useful: https://github.com/nf-core/modules/pull/987

mahesh-panchal commented 2 years ago

Added