Open mahesh-panchal opened 9 months ago
We need a suitable test data set. Matthieu Muffato ( Wellcome Sanger Institute ) suggested Laetiporus sulphureus ( 37MB; Fungus )
PacBio Sequel IIe: ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR680/ERR6808041/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.bam
ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR680/ERR6808041/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.bam
Hi-C Arima v2: ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_1.fastq.gz, ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_2.fastq.gz
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_1.fastq.gz
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_2.fastq.gz
There's also 10XGenomics data available too.
A subsampled file (0.25) is available at /proj/snic2021-6-194/Test_Laetiporus-sulphreus/
/proj/snic2021-6-194/Test_Laetiporus-sulphreus/
We need a suitable test data set. Matthieu Muffato ( Wellcome Sanger Institute ) suggested Laetiporus sulphureus ( 37MB; Fungus )
PacBio Sequel IIe:
ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR680/ERR6808041/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.bam
Hi-C Arima v2:
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_1.fastq.gz
,ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_2.fastq.gz
There's also 10XGenomics data available too.