Test Data - Laetiporus sulphureus - Chicken of the Woods

NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

https://www.earthbiogenome.org/

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Test Data - Laetiporus sulphureus - Chicken of the Woods #50

Open mahesh-panchal opened 1 year ago

mahesh-panchal commented 1 year ago

We need a suitable test data set. Matthieu Muffato ( Wellcome Sanger Institute ) suggested Laetiporus sulphureus ( 37MB; Fungus )

PacBio Sequel IIe: ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR680/ERR6808041/m64229e_210602_121910.ccs.bc1020_BAK8B_OA--bc1020_BAK8B_OA.bam

Hi-C Arima v2: ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_1.fastq.gz, ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR668/000/ERR6688740/ERR6688740_2.fastq.gz

There's also 10XGenomics data available too.

mahesh-panchal commented 1 year ago

A subsampled file (0.25) is available at /proj/snic2021-6-194/Test_Laetiporus-sulphreus/