Reporting a warning when below coverage for GenomeScope and Smudgeplot

NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

https://www.earthbiogenome.org/

GNU General Public License v3.0

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Open mahesh-panchal opened 9 months ago

mahesh-panchal commented 9 months ago

In general, having at least 15x coverage per homolog for GenomeScope and 25x coverage per homolog for Smudgeplot is required.

If coverage is below this, we should display a warning of some kind.