NBISweden / Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
https://www.earthbiogenome.org/
GNU General Public License v3.0
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New Module: GOAT #58

Closed mahesh-panchal closed 8 months ago

mahesh-panchal commented 8 months ago

Which tool should be included? Genomes on a tree

How is it used?

$ goat-cli taxon search -lt "Laetiporus sulphureus" -v odb10_lineage
taxon_id        taxon_rank      scientific_name odb10_lineage
5303    order   Polyporales     polyporales_odb10
155619  class   Agaricomycetes  agaricomycetes_odb10
5204    phylum  Basidiomycota   basidiomycota_odb10
4751    kingdom Fungi   fungi_odb10
2759    superkingdom    Eukaryota       eukaryota_odb10

https://github.com/nf-core/modules/tree/master/modules/nf-core/goat/taxonsearch

Which workflow should it be included in? Data inspection.