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NBISweden
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Earth-Biogenome-Project-pilot
Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.
https://www.earthbiogenome.org/
GNU General Public License v3.0
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#66
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mahesh-panchal
closed
10 months ago
mahesh-panchal
commented
10 months ago
Add Genome size, chromosome number, and ploidy via GOAT
Add warning if genome size differs largely from genescopefk estimate
Update hifiasm module to output
*.bp.p_ctg.gfa
Update parameter "schema" to not break reentrancy, and rename certain variables.
Include parameter to switch between using haplotypes or consensus output.
Include mitohifi ( Resolves #29; Resolves #35 )
Update hifiasm tool version.
Increase nf-core time defaults.
Rename output folders.
Restructure workflow meta data.
*.bp.p_ctg.gfa