cannot run with only fastq file

NBISweden / GUESSmyLT

An efficient way to guess the library type of your RNA-Seq data.

GNU General Public License v3.0

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cannot run with only fastq file #11

Closed mistrm82 closed 5 years ago

mistrm82 commented 5 years ago

The README says that we can run with only fastq files but I am unable to do so:

GUESSmyLT --reads raw_fastq/Mov10_oe_1.subset.fq

Mode parameter (--mode) must be filled when no annotation provided (--annotation). It must be <genome> or <transcriptome>.

Juke34 commented 5 years ago

As suggested by the message it is missing the ‘—mode’ option. Just add ‘—mode genome’ and it should work fine.(launching the tool like that require trinity to be installed)

Juke34 commented 5 years ago

I parameter is now optional, I have put 'genome' as default