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NBISweden / GenErode

GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
GNU General Public License v3.0
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Upgrade to Snakemake version 7 #27

Closed verku closed 1 year ago

verku commented 1 year ago

Snakemake version 6 is not compatible with the latest version of the slurm profile (see https://github.com/NBISweden/GenErode/wiki/8.-FAQ#im-trying-to-run-the-pipeline-with-the-snakemake-slurm-profile-but-im-getting-the-following-error-snakemake-error-unrecognized-arguments---cluster-cancelscancel-how-do-i-solve-this)

verku commented 1 year ago

When Snakemake version 7 works, make a fork of the current slurm profile and update the documentation to point to it to prevent future issues like that.