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NBISweden / GenErode

GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
GNU General Public License v3.0
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Fastqc Memory issues #51

Closed lored322 closed 10 months ago

lored322 commented 1 year ago

Apparently the new version of Fastqc is able to handle memory better - might be good to update to that version?

FastQC v0.12.1 is now out which should fix most of these memory related issues by increasing the default memory allocation. If there are still files which generate memory errors then there's now an option (--memory) where you can specifically increase the memory allocation without having to mess around with the number of threads to use.

verku commented 1 year ago

Thanks, this is good to know! I'll make sure to include the new fastqc version into the next GenErode version.