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NBISweden / GenErode

GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
GNU General Public License v3.0
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fastp cannot autodetect NovaSeqXPlus for automatic polyG trimming #66

Closed verku closed 5 months ago

verku commented 6 months ago

fastp cannot autodetect NovaSeqXPlus for automatic polyG trimming (https://github.com/OpenGene/fastp/pull/508)

verku commented 5 months ago

Feedback from pipeline users: it "seems like it’s few longer reads having it and they’re not mapped afterwards"