Require fewer sequences for errorplots

NBISweden / IgDiscover-legacy

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

https://www.igdiscover.se

MIT License

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Require fewer sequences for errorplots #26

Closed marcelm closed 7 years ago

marcelm commented 8 years ago

Originally reported by: Marcel Martin (Bitbucket: marcelm, GitHub: marcelm)

Currently, an errorplot is made only if at least 200 sequences are assigned to a gene, which is too strict especially on small library sizes.

Bitbucket: https://bitbucket.org/igdiscover/igdiscover/issue/26

marcelm commented 8 years ago

Original comment by Marcel Martin (Bitbucket: marcelm, GitHub: marcelm):

The threshold is now dynamic. An error plot for a gene will now be skipped if less than 0.1% of the sequences (after filtering) are assigned to it, but if this computation results in a threshold of greater than 100, it is set to 100.