For cross-mapping correction, ignore last 5 bases

NBISweden / IgDiscover-legacy

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

https://www.igdiscover.se

MIT License

17 stars 10 forks source link

Closed marcelm closed 7 years ago

marcelm commented 7 years ago

When computing the distance between two V sequences, ignore differences in those last bases that are part of the CDR3

Among multiple V sequences, the one with the highest number of CDR3s is usually the full-length one - that one should be kept.

marcelm commented 7 years ago

For sequence comparison in germline filter, ignore CDR3 part of V

Closes #30