Problems installing IgDiscover development in a new Ubuntu 16.04

[NestorVB]

I tried to install IgDiscover development by installing first the stable version and then upgrading to development following the instructions. It did not work, so I removed everything and tried it again with the same results. It seems there is a problem with the uninstallation of Igdiscover stable version before installing the development version. Could you help me figure out how to fix it? This is the terminal info when I try to install the development:

nestor@nestor-Precision-5510:~$ igdiscover --version
igdiscover 0.8.0
nestor@nestor-Precision-5510:~$ conda uninstall igdiscover
Fetching package metadata ...........
Solving package specifications: .

Package plan for package removal in environment /home/nestor/miniconda3:

The following packages will be REMOVED:

    igdiscover: 0.8.0-py36_1 bioconda

Proceed ([y]/n)? y

nestor@nestor-Precision-5510:~$ git clone https://github.com/NBISweden/IgDiscover.git
Cloning into 'IgDiscover'...
remote: Counting objects: 4280, done.
remote: Total 4280 (delta 0), reused 0 (delta 0), pack-reused 4280
Receiving objects: 100% (4280/4280), 1.35 MiB | 1.29 MiB/s, done.
Resolving deltas: 100% (2986/2986), done.
Checking connectivity... done.
nestor@nestor-Precision-5510:~$ cd IgDiscover/
nestor@nestor-Precision-5510:~/IgDiscover$ python3 -m pip install -e .
Obtaining file:///home/nestor/IgDiscover
Requirement already satisfied: sqt>=0.8.0 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: pandas>=0.16.2 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: numpy in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: matplotlib>=1.5.0 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: seaborn==0.7.1 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: snakemake>=3.9.0 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: cutadapt in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: scipy>=0.16.1 in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: xopen>=0.1.1 in /home/nestor/miniconda3/lib/python3.6/site-packages/xopen-0.1.1-py3.6.egg (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: ruamel.yaml in /home/nestor/miniconda3/lib/python3.6/site-packages (from igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: pysam!=0.9.0 in /home/nestor/miniconda3/lib/python3.6/site-packages (from sqt>=0.8.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: python-dateutil>=2 in /home/nestor/miniconda3/lib/python3.6/site-packages (from pandas>=0.16.2->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: pytz>=2011k in /home/nestor/miniconda3/lib/python3.6/site-packages (from pandas>=0.16.2->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: six>=1.10 in /home/nestor/miniconda3/lib/python3.6/site-packages (from matplotlib>=1.5.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: cycler>=0.10 in /home/nestor/miniconda3/lib/python3.6/site-packages (from matplotlib>=1.5.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /home/nestor/miniconda3/lib/python3.6/site-packages (from matplotlib>=1.5.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: wrapt in /home/nestor/miniconda3/lib/python3.6/site-packages (from snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: requests in /home/nestor/miniconda3/lib/python3.6/site-packages (from snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/nestor/miniconda3/lib/python3.6/site-packages (from requests->snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: idna<2.7,>=2.5 in /home/nestor/miniconda3/lib/python3.6/site-packages (from requests->snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: urllib3<1.23,>=1.21.1 in /home/nestor/miniconda3/lib/python3.6/site-packages (from requests->snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Requirement already satisfied: certifi>=2017.4.17 in /home/nestor/miniconda3/lib/python3.6/site-packages (from requests->snakemake>=3.9.0->igdiscover==0.8.0+58.g93904e1)
Installing collected packages: igdiscover
  Found existing installation: igdiscover 0.8.0+58.g93904e1
    Can't uninstall 'igdiscover'. No files were found to uninstall.
  Running setup.py develop for igdiscover
Successfully installed igdiscover
nestor@nestor-Precision-5510:~/IgDiscover$ 

[marcelm]

I think that the message Can't uninstall 'igdiscover'. No files were found to uninstall. is not actually an error message. Can you run IgDiscover? What does igdiscover --version say?

[marcelm]

I’ve sent instructions by e-mail.