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NBISweden / IgDiscover-legacy

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
https://www.igdiscover.se
MIT License
17 stars 10 forks source link

Remove differences setting in germline filters #87

Closed marcelm closed 5 years ago

marcelm commented 5 years ago

The germline filters can currently be configured to merge sequences that differ by at most a given number of edits. We have already changed the default to 0 for this (see #49), but it can be removed from the configuration entirely, and possibly from the germlinefilter script itself. It just doesn’t make sense to allow this when what we are looking for are explicitly alleles that do differ in just one position.

marcelm commented 5 years ago

Already done in d2341ecf687a52bf2efd5f1c306326991134aa76