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NBISweden / MrBayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
http://NBISweden.github.io/MrBayes/
GNU General Public License v3.0
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How to get a XXX% majority rule tree? #210

Open Alexei-Kassian opened 4 years ago

Alexei-Kassian commented 4 years ago

By default MrBayes produces a resulting consensus tree which is a 50% majority rule one (Contype=Halfcompat). The command Contype=Allcompat produces a consensus tree with all bifurcations. Is it possible to change the threshold and get, say, a 68% majority rule consensus tree or a 95% majority rule one?

Alexei-Kassian commented 4 years ago

If I understand the manual correctly, the following command should return a 95% majority rule tree: sumt relburnin=yes burninfrac=0.25 nruns=4 Filename=TEST minpartfreq=0.95; But actually it doesn't work, i.e., it returns the same 50% majority rule tree.