Open danielyao12 opened 3 years ago
Dear @danielyao12
The NA
indicates clearly that there are some errors with the analysis.
I was surprised, however, to see that your command example executed in the first place. Lines 7 and 8 lacks the end-of-line semicolons. But maybe that is a cut-and-paste error on this website?
Unfortunately, assuming the commands indeed was correctly executed, I can't give more advise unless seeing the input file.
Yours
Johan
I'm sorry if I posted my questions in unsuitable place. I tried to use the MrBayes for the BUCKy analysis, and my sequence file was 10,000 bp SNPs. I ran the MrBayes version 3.2.7a on centos7 system. But every diagnfreq displayed "Average standard deviation of split frequencies: NA (no splits above min. frequency)". Originally, I thought that it might be because the number of generation was not long enough. Then, I set the ngen to 21,000,000. It still displayed "Average standard deviation of split frequencies: NA (no splits above min. frequency)". My questions are:
Here is the block file I used.
This block file was edited basing on the BUCKy tutorial. I also searched similar questions in the Google Group of the BUCKy and other websites in Google, but I didn't find useful information. I appreciate if anyone knows what I should do about my questions. Thank you.
Best regards, Xin