51mystic
commented
1 year ago Added code execution error information： Executing file "matrix-80-align-concatenate-nexus.nexus" UNIX line termination Longest line length = 5823723 Parsing file Expecting NEXUS formatted file Reading data block Allocated taxon set Allocated matrix Defining new matrix with 7 taxa and 5823716 characters Data is Dna Missing data coded as ? Gaps coded as - Taxon 1 -> LD10A Error while parsing a string. Token "tctttgatctacctggcaac...[followed by at least 99970 more charectors]" is too long. Maximum allowed length of a token is 99990 The error occurred when reading char. 662483-662502 on line 6 in the file 'matrix-80-align-concatenate-nexus.nexus'
Returning execution to command line ...
Error in command "Execute"
Will exit with signal 1 (error) because quitonerror is set to yes
If you want control to be returned to the command line on error,
use 'mb -i
nylander
Dear teacher, when I execute the code, the ### sequence is too long, resulting in ### code interruption, I refer to the error guidance, add ### interleave information, after saving, still can not run. I would like to ask you how to solve this problem. Here's what my code looks like: begin data; dimensions ntax=7 nchar=5823716; format datatype=dna missing=? gap=- interleave; matrix LD10A catgatgaaggaaattttggatattaacggggatttttttgg...... ... LD7A cgtattgaatacaacttttt---ttgttaacggggatttttttgg...... ; end; ... begin mrbayes; set autoclose=yes nowarn=yes; lset nst=6 rates=invgamma; prset statefreqpr=fixed(equal); outgroup LD10A mcmc ngen=1000000 printfreq=1000 samplefreq=100 samplefile=/mnt/data/userdata/svip019/00----outcome/mrbayes-o/myout.nex; sumt burnin=250; end; Looking forward to your answer.