NBISweden / aMeta

Ancient microbiome snakemake workflow
MIT License
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Add pysam to the workflow/envs/mapdamage.yaml #132

Closed ZoePochon closed 1 year ago

ZoePochon commented 1 year ago

As MinLuke reported in issue #131, newly created conda environments don't work on the mapDamage step because they don't find pysam.

A quick fix is to add pysam in the workflow/envs/mapdamage.yaml like this:

channels:

worked for him and for me

jfy133 commented 1 year ago

Can confirm the issue!

jfy133 commented 1 year ago

(testing the workaround)

LeandroRitter commented 1 year ago

I close it since the issue was fixed in the previous PR