@percyfal I found and fixed quite a few bugs in the score.R script. Looks like after another modification of the authentic.smk, the score.R was not modified accordingly so the scoring system was not working correctly for some period. I also tried to replace paste0 with file.path where possible without too much fiddling with the code as I am not entirely sure about the behavior of file.path in contrast to paste0. Hope it is ok for now, and I will try to switch more and more to file.path in the future
@percyfal I found and fixed quite a few bugs in the score.R script. Looks like after another modification of the authentic.smk, the score.R was not modified accordingly so the scoring system was not working correctly for some period. I also tried to replace paste0 with file.path where possible without too much fiddling with the code as I am not entirely sure about the behavior of file.path in contrast to paste0. Hope it is ok for now, and I will try to switch more and more to file.path in the future