NBISweden / aMeta

Ancient microbiome snakemake workflow
MIT License
19 stars 15 forks source link

add scientific names to taxIDs in results/AUTHENTICATION and malt_abundance_matrix_rma6.txt #163

Open LeandroRitter opened 1 month ago

LeandroRitter commented 1 month ago

Currently, it is not easy for the users to look inside the results/AUTHENTICATION folder as the names of the subfolders represent taxIDs instead of scientific names. The same is valid for malt_abundance_matrix_rma6.txt file where the first column represent the taxIDs.

In both cases, one can use the dictionary obtained from aMeta/results/KRAKENUNIQ_ABUNDANCE_MATRIX:

paste unique_species_taxid_list.txt unique_species_names_list.txt

for converting taxIDs to scientific names.