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NBISweden / aMeta

Ancient microbiome snakemake workflow
MIT License
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Malt_Extract fails due to missing entries in custom ncbi.map #63

Closed percyfal closed 1 year ago

percyfal commented 2 years ago

MaltExtract fails when setting the option -r to a custom ncbi.map. If missing, MaltExtract will download the required data automatically.

percyfal commented 1 year ago

This now seems to be fixed. See https://github.com/NBISweden/ancient-microbiome-smk/blob/55c7003633d2fd15ebc3fd68cd8d953363b7c739/workflow/rules/malt.smk#L119 and https://github.com/NBISweden/ancient-microbiome-smk/commit/646354cfd92fd93fb270d67ff4125b1539d139c4.