Resources are assigned to rules by using the rule name verbatim in combination with a specific resource. To avoid confusion, I propopse we use verbatim rule names in the messages. For example, change
"QUANTIFYING MICROBIAL ABUNDANCE USING MALT SAM-ALIGNMENTS FOR SAMPLE {input.sam}"
to something like
"Malt_QuantifyAbundance: QUANTIFYING MICROBIAL ABUNDANCE USING MALT SAM-ALIGNMENTS FOR SAMPLE {input.sam}"
Resources are assigned to rules by using the rule name verbatim in combination with a specific resource. To avoid confusion, I propopse we use verbatim rule names in the messages. For example, change
"QUANTIFYING MICROBIAL ABUNDANCE USING MALT SAM-ALIGNMENTS FOR SAMPLE {input.sam}"to something like
"Malt_QuantifyAbundance: QUANTIFYING MICROBIAL ABUNDANCE USING MALT SAM-ALIGNMENTS FOR SAMPLE {input.sam}"