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NBISweden / aMeta

Ancient microbiome snakemake workflow
MIT License
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Impossible to give more threads to the rule "KrakenUniq2Krona" #86

Closed ZoePochon closed 2 years ago

ZoePochon commented 2 years ago

So I have noticed that whatever I change in the config file, I cannot allocate more cpu than 1 to the rule "KrakenUniq2Krona". I suspect that this is because their is another rule called KrakenUniq that I encounter this problem. Not very sure why otherwise cause it's the only rule for which I have this problem.

clami66 commented 2 years ago

Pull request #87 makes it not necessary to request a full node for this rule (should run on a single core now, hopefully). So I will close this issue