Fixes issue #71.
We have limited the number for PMDtools (for another fix), however samtools was continuing to transmit into a closed pipe probably generating the non-zero exit status. This fixes the error I encountered for rule PMD_score and Deamination in my recent project at least.
Fixes issue #71. We have limited the number for PMDtools (for another fix), however samtools was continuing to transmit into a closed pipe probably generating the non-zero exit status. This fixes the error I encountered for rule PMD_score and Deamination in my recent project at least.