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NBISweden / assembly-project-template

This is a template for all assembly projects. Please read the instructions below on how to use it.
https://nbisweden.github.io/assembly-project-template/
MIT License
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Shared Nextflow environment not available. #13

Closed n-equals-one closed 7 months ago

n-equals-one commented 9 months ago

The shared Nextflow environment referred to in: analyses/01_assembly-workflow_initial-run_rackham/run_nextflow.sh

is no longer available.
Do we need to point it somewhere else or simply just create a new environment?

mahesh-panchal commented 9 months ago

What happened to the allocation?

Either: Make a new environment and make a PR to the correct the path in the template. Or: Comment out the environment setup in the run_nextflow.sh and load Nextflow from your own conda environment or from modules.

We should make an envs folder with the conda definition of the environment.