Make it possible to extract proteins for certain taxa before building database

NBISweden / contigtax

Taxonomic classification of metagenomic contigs

MIT License

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Make it possible to extract proteins for certain taxa before building database #2

Open johnne opened 5 years ago

johnne commented 5 years ago

After the reformatting (or during, if working with the uniref databases) it should be possible to extract only proteins matching a certain taxon, say only Bacteria. This could be done on the command line with --taxlimit superkingdom:Bacteria for instance or --taxlimit superkingdom Bacteria Archaea