NBISweden / nbis-meta

A snakemake workflow for metagenomic projects
https://nbis-metagenomic-workflow.readthedocs.io/
MIT License
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Slurm #12

Closed johnne closed 4 years ago

johnne commented 4 years ago

This PR integrates the slurm snakemake profile directly into the workflow. This is handled by adding the compute cluster account to the config/cluster.yaml file, then running the workflow with snakemake --profile slurm from the root of the repository.