Open Juke34 opened 4 years ago
we could also add normalization (as an option if data too big). do we do denovo or reference guided with trinity? (we could do both) need QC (transcript QC : detonate, transrate, more?) need filtering maybe
use scilifelab (nf-core) RNAseq pipeline? to check
Should be more generalized. With choice for read aligner:
choice of different assemblers (Why? Because better result: ):
And an optional filtering step at the end: Mikado
EviGene