Closed mahesh-panchal closed 4 years ago
I don't know how to use the new options, could you update the help? https://github.com/NBISweden/pipelines-nextflow/tree/add_fastp/pipelines/TranscriptAssembly
does not work
N E X T F L O W ~ version 19.10.0
Launching `/home/jacda119/git/NBIS/pipelines-nextflow/pipelines/TranscriptAssembly/TranscriptAssembly.nf` [extravagant_lalande] - revision: 3214a0a7aa
Unknown config attribute `trimming_tools` -- check config file: /projects/test/test_nextflow/TranscriptAssembly/stranded/params.config
My parameter file contains:
params.trimmer = trimming_tools[0]
Well, that is supposed to have a string value that you give. I'll change the code so 'fastp' is the default then, rather than the first trimmer in the list of tools.
Error executing process > 'transcript_assembly:multiqc'
is the path wrong?
params.multiqc_config = "$baseDir/config/multiqc_conf.yml"
The path should be correct.
Change Log: