Patch interproscan. Disable container, use Uppmax module / conda env.

NBISweden / pipelines-nextflow

A set of workflows written in Nextflow for Genome Annotation.

GNU General Public License v3.0

42 stars 18 forks source link

Patch interproscan. Disable container, use Uppmax module / conda env. #56

Closed mahesh-panchal closed 3 years ago

mahesh-panchal commented 3 years ago

In order to still be able to use singularity I patched the config instead to check the profile in use. The config should now load Interproscan from the module system when using the profile uppmax. @verku could you test if this is viable?

verku commented 3 years ago

This worked without error messages with a subset of a bird genome annotation