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NBISweden / pipelines-nextflow

A set of workflows written in Nextflow for Genome Annotation.
GNU General Public License v3.0
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running on HPC #65

Closed Shicheng-Guo closed 2 years ago

Shicheng-Guo commented 2 years ago

Do you test them to run them on Slurm based HPC system? Thanks Shicheng

mahesh-panchal commented 2 years ago

Yes. Uppmax and our own cluster both use slurm as the job queue manager.

Please follow the instructions on how to configure the pipelines. To better understand the configuration options we provide, please read https://www.nextflow.io/docs/latest/config.html, which describes how to configure a Nextflow workflow. We provide two profiles that use the slurm executor; one specifically for Uppmax, and the other specifically for our annotation cluster. The profiles may be useful to you, otherwise you will need to write your own configuration profile. I hope that helps.