Closed mkierczak closed 4 years ago
Resolved issue with BUSCO by migrating to docker hub BUSCO container.
That doesn't solve the issue when using the conda environments though. I'm thinking of roling back to a previous version of busco.
Solved config path issue with https://github.com/NBISweden/pipelines-nextflow/pull/11/commits/13d24968be889eddd315ec72437b28e00fd3ba92.
No issues now using Busco 4.0.2 with either conda, or singularity on the other branch. The gff2gbSmallDNA.pl
note above seems to be mistake.
Issues:
config.ini
path is different in conda, and singularity environments.$workDir/conda/busco-<somestring>/config/config.ini
/usr/local/config/config.ini
gff2gbSmallDNA.pl
in conda package.