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NBISweden / pipelines-nextflow

A set of workflows written in Nextflow for Genome Annotation.
GNU General Public License v3.0
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"WARN: There's no process matching config selector" warning message #78

Closed aersoares81 closed 2 years ago

aersoares81 commented 2 years ago

I'm getting this warning message:

[-        ] process > ANNOTATION_PREPROCESSING:AS... -
[-        ] process > ANNOTATION_PREPROCESSING:BUSCO -
Pulling Singularity image https://depot.galaxyproject.org/singularity/gaas:1.2.0--pl526r35_0 [cache /active/nxf_singularity_cachedir/depot.galaxyproject.org-singularity-gaas-1.2.0--pl526r35_0.img]
WARN: There's no process matching config selector: BLAST_BLASTN -- Did you mean: BLAST_BLASTP?

It doesn't look like it affects preprocessing, but I thought about bringing this up anyway.

mahesh-panchal commented 2 years ago

That's weird. Do you have a nextflow.config file in the same directory you're launching this pipeline from?

mahesh-panchal commented 2 years ago

There's no reference to BLAST_BLASTN in the workflow except in the README. I did find a small error with the blastp module but nothing to do with configuration like this.

aersoares81 commented 2 years ago

It was a setting on the config file that was not needed for this.