NBISweden / sda-cli

User command line interface for the SDA
GNU Affero General Public License v3.0
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add system tests for htsget #435

Open pahatz opened 2 months ago

pahatz commented 2 months ago

Related issue(s) and PR(s)
This PR closes #367

Description Adds system tests for htsget module

How to test

codecov-commenter commented 2 months ago

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Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 41.24%. Comparing base (5943ded) to head (ff52f3b). Report is 57 commits behind head on main.

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #435 +/- ## ======================================= Coverage 41.24% 41.24% ======================================= Files 13 13 Lines 2051 2051 ======================================= Hits 846 846 Misses 1084 1084 Partials 121 121 ``` | [Flag](https://app.codecov.io/gh/NBISweden/sda-cli/pull/435/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=NBISweden) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/NBISweden/sda-cli/pull/435/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=NBISweden) | `41.24% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=NBISweden#carryforward-flags-in-the-pull-request-comment) to find out more.

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