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NBISweden
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swefreq
Swedish Frequency resource for genomics website
https://swefreq.nbis.se/
GNU General Public License v3.0
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New version of SweFreq with PostgreSQL
#557
Closed
talavis
closed
5 years ago
talavis
commented
5 years ago
Describe the pull request:
[X] Bug fix
[X] Functional change
[X] New feature
[X] Code cleanup
[X] Build system change
[X] Documentation change
[X] Language translation
Pull request long description:
General
Database migrated from
mysql
and
mongodb
to
postgresql
New database schemas
Import scripts for datasets and references to the new database
Support for registered access for Dataset VCF files
Simplified setup for development enviroment
Beacon migrated to "external" elixir beacon
Beacon UI changes
Target python version is now 3.6
A lof of bug fixes
Browser
Browser migrated to postgresql
Browser UI changes, e.g. dynamic updates to number of shown variants
Tests for most of the browser backend
Support for showing the same variant in other datasets on the browser variant page
Download
will now download the visible variants, not all variants for the gene/region/etc
A lof of bug fixes
Describe the pull request:
Pull request long description:
General
mysql
andmongodb
topostgresql
Browser
Download
will now download the visible variants, not all variants for the gene/region/etc