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NBISweden / workshop-reproducible-research

NBIS/Elixir course: Tools for Reproducible Research
https://nbisweden.github.io/workshop-reproducible-research/
Creative Commons Attribution 4.0 International
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Change R Markdown material to Quarto #246

Closed fasterius closed 12 months ago

fasterius commented 1 year ago

This PR changes all the material we have on R Markdown to Quarto. This includes the material itself (e.g. pages), Conda environments and Docker images, but also all lectures and the example supplementary material file used in the Container session.

Lectures used to be tracked as PDFs in the repo for students to download as needed while HTMLs was up to the teachers to render before holding a lecture, but everything is now HTML - including tracked files. All lectures are structured as a Quarto project (the _quarto.yml file) and uses the NBIS Quarto template as a base-line, which includes the NBIS colours and logo.

All figures containing a logo has been updated accordingly.

The markdown example wording has been lightly changed and had an image of the resulting render added for clarity.

johnne commented 1 year ago

I ran through it one more time with some minor modifications. Looks good to me.