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NBISweden / workshop-reproducible-research

NBIS/Elixir course: Tools for Reproducible Research
https://nbisweden.github.io/workshop-reproducible-research/
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Nextflow lecture missing params description #254

Closed johnne closed 11 months ago

johnne commented 11 months ago

https://github.com/NBISweden/workshop-reproducible-research/blob/e4e4bfacec855839a1b4b9df604e27c2921bff4b/lectures/nextflow/nextflow.qmd#L130

This line in the nextflow intro lecture uses {params.depth} but as far as I can tell params are not used or explained elsewhere.

fasterius commented 11 months ago

That particular section is meant as a fast-fire summary of some common functionality, so the explanation is purposefully omitted (parameters are explained in the 5th Nextflow tutorial page). Same thing can be said of other content in this slide, e.g. the container and conda directives.

Having said that, I think this is a non-issue. If you disagree we'll have to rework the lecture a bit.

johnne commented 11 months ago

Ok! Just wanted to check.