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NCAR / pynio

PyNIO is a multi-format data I/O package with a NetCDF-style interface
http://www.pyngl.ucar.edu/Nio.shtml
Apache License 2.0
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Importing Pynio image not found error #47

Closed carlspangrude closed 3 years ago

carlspangrude commented 3 years ago

Hello,

I have installed pynio on MacOS using:

conda install -n pyn_env -c conda-forge pynio

But when I attempt to import Nio using:

import Nio, os, sys

I am getting the following error: 

ImportError: dlopen(/Users/msgc/opt/miniconda3/envs/pyn_env/lib/python3.8/site-packages/PyNIO/_nio.cpython-38-darwin.so, 2): Library not loaded: @rpath/libtbb.dylib
  Referenced from: /Users/msgc/opt/miniconda3/envs/pyn_env/lib/libtiledb.dylib
  Reason: image not found

Here is the output from 'conda list':

packages in environment at /Users/msgc/opt/miniconda3/envs/pyn_env:
Name                    Version                   Build  Channel
alabaster                 0.7.12             pyhd3eb1b0_0  
appdirs                   1.4.4                      py_0  
applaunchservices         0.2.1                      py_0  
appnope                   0.1.2           py38hecd8cb5_1001  
argh                      0.26.2                   py38_0  
arrow                     0.13.1                   py38_0  
astroid                   2.5              py38hecd8cb5_1  
async_generator           1.10               pyhd3eb1b0_0  
atomicwrites              1.4.0                      py_0  
attrs                     20.3.0             pyhd3eb1b0_0  
autopep8                  1.5.6              pyhd3eb1b0_0  
babel                     2.9.0              pyhd3eb1b0_0  
backcall                  0.2.0              pyhd3eb1b0_0  
binaryornot               0.4.4              pyhd3eb1b0_1  
black                     19.10b0                    py_0  
bleach                    3.3.0              pyhd3eb1b0_0  
boost-cpp                 1.72.0               hdf9ef73_0    conda-forge
brotlipy                  0.7.0           py38h9ed2024_1003  
bzip2                     1.0.8                h0d85af4_4    conda-forge
c-ares                    1.17.1               h0d85af4_1    conda-forge
ca-certificates           2020.12.5            h033912b_0    conda-forge
cairo                     1.16.0            hec6a9b0_1003    conda-forge
certifi                   2020.12.5        py38h50d1736_1    conda-forge
cffi                      1.14.5           py38h2125817_0  
cfitsio                   3.470                h422484a_7    conda-forge
chardet                   4.0.0           py38hecd8cb5_1003  
click                     7.1.2              pyhd3eb1b0_0  
cloudpickle               1.6.0                      py_0  
colorama                  0.4.4              pyhd3eb1b0_0  
cookiecutter              1.7.2              pyhd3eb1b0_0  
cryptography              3.4.7            py38h2fd3fbb_0  
curl                      7.76.1               h06286d4_1    conda-forge
dbus                      1.13.18              h18a8e69_0  
decorator                 5.0.6              pyhd3eb1b0_0  
defusedxml                0.7.1              pyhd3eb1b0_0  
diff-match-patch          20200713                   py_0  
docutils                  0.17             py38hecd8cb5_1  
entrypoints               0.3                      py38_0  
expat                     2.3.0                h23ab428_2  
flake8                    3.9.0              pyhd3eb1b0_0  
fontconfig                2.13.1            h10f422b_1005    conda-forge
freetype                  2.10.4               h4cff582_1    conda-forge
freexl                    1.0.6                h0d85af4_0    conda-forge
future                    0.18.2                   py38_1  
g2clib                    1.6.0                h4e57d6e_9    conda-forge
geos                      3.8.1                h4a8c4bd_0    conda-forge
geotiff                   1.5.1               hd8796ba_10    conda-forge
gettext                   0.21.0               h7535e17_0  
giflib                    5.2.1                hbcb3906_2    conda-forge
glib                      2.68.1               hdf23fa2_0  
hdf4                      4.2.13            hefd3b78_1005    conda-forge
hdf5                      1.10.5          nompi_h34ad4e8_1111    conda-forge
hdfeos2                   2.20              h207910d_1000    conda-forge
hdfeos5                   5.1.16               hc5a5cdf_6    conda-forge
icu                       64.2                 h6de7cb9_1    conda-forge
idna                      2.10               pyhd3eb1b0_0  
imagesize                 1.2.0              pyhd3eb1b0_0  
importlib-metadata        3.10.0           py38hecd8cb5_0  
importlib_metadata        3.10.0               hd3eb1b0_0  
inflection                0.5.1            py38hecd8cb5_0  
intervaltree              3.1.0                      py_0  
ipykernel                 5.3.4            py38h5ca1d4c_0  
ipython                   7.22.0           py38h01d92e1_0  
ipython_genutils          0.2.0              pyhd3eb1b0_1  
isort                     5.8.0              pyhd3eb1b0_0  
jasper                    1.900.1           h636a363_1006    conda-forge
jedi                      0.17.2           py38hecd8cb5_1  
jinja2                    2.11.3             pyhd3eb1b0_0  
jinja2-time               0.2.0              pyhd3eb1b0_2  
jpeg                      9d                   hbcb3906_0    conda-forge
json-c                    0.13.1            h575e443_1002    conda-forge
jsonschema                3.2.0                      py_2  
jupyter_client            6.1.12             pyhd3eb1b0_0  
jupyter_core              4.7.1            py38hecd8cb5_0  
jupyterlab_pygments       0.1.2                      py_0  
kealib                    1.4.13               h2324030_0    conda-forge
keyring                   22.3.0           py38hecd8cb5_0  
krb5                      1.17.2               h60d9502_0    conda-forge
lazy-object-proxy         1.6.0            py38h9ed2024_0  
libblas                   3.8.0               17_openblas    conda-forge
libcblas                  3.8.0               17_openblas    conda-forge
libcurl                   7.76.1               h8ef9fac_1    conda-forge
libcxx                    11.1.0               habf9029_0    conda-forge
libdap4                   3.20.6               h3e144a0_2    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 haf1e3a3_1    conda-forge
libffi                    3.3                  hb1e8313_2  
libgdal                   3.0.4                ha92c1e4_6    conda-forge
libgfortran               4.0.0           7_5_0_h1a10cd1_22    conda-forge
libgfortran4              7.5.0               h1a10cd1_22    conda-forge
libiconv                  1.16                 h1de35cc_0  
libkml                    1.3.0             h88bc94a_1012    conda-forge
liblapack                 3.8.0               17_openblas    conda-forge
libnetcdf                 4.7.4           nompi_he461dc0_101    conda-forge
libnghttp2                1.43.0               h07e645a_0    conda-forge
libopenblas               0.3.10          openmp_h63d9170_3    conda-forge
libpng                    1.6.37               ha441bb4_0  
libpq                     12.3                 h7049927_3    conda-forge
libsodium                 1.0.18               h1de35cc_0  
libspatialindex           1.9.3                h23ab428_0  
libspatialite             4.3.0a            h658e6c1_1038    conda-forge
libssh2                   1.9.0                h52ee1ee_6    conda-forge
libtiff                   4.2.0                h355d032_0    conda-forge
libuuid                   2.32.1            h35c211d_1000    conda-forge
libwebp-base              1.2.0                h0d85af4_2    conda-forge
libxml2                   2.9.10               h53d96d6_0    conda-forge
llvm-openmp               10.0.0               h28b9765_0  
lz4-c                     1.9.2                hb1e8313_3    conda-forge
markupsafe                1.1.1            py38h1de35cc_1  
mccabe                    0.6.1                    py38_1  
mistune                   0.8.4           py38h1de35cc_1001  
mypy_extensions           0.4.3                    py38_0  
nbclient                  0.5.3              pyhd3eb1b0_0  
nbconvert                 6.0.7                    py38_0  
nbformat                  5.1.3              pyhd3eb1b0_0  
ncurses                   6.2                  h0a44026_1  
nest-asyncio              1.5.1              pyhd3eb1b0_0  
numpy                     1.20.2           py38had91d27_0    conda-forge
numpydoc                  1.1.0              pyhd3eb1b0_1  
openjpeg                  2.3.1                h6cbf5cd_3    conda-forge
openssl                   1.1.1k               h0d85af4_0    conda-forge
packaging                 20.9               pyhd3eb1b0_0  
pandoc                    2.12                 hecd8cb5_0  
pandocfilters             1.4.3            py38hecd8cb5_1  
parso                     0.7.0                      py_0  
pathspec                  0.7.0                      py_0  
pcre                      8.44                 hb1e8313_0  
pexpect                   4.8.0              pyhd3eb1b0_3  
pickleshare               0.7.5           pyhd3eb1b0_1003  
pip                       21.0.1           py38hecd8cb5_0  
pixman                    0.38.0            h01d97ff_1003    conda-forge
pluggy                    0.13.1           py38hecd8cb5_0  
poppler                   0.67.0               h16886b5_8    conda-forge
poppler-data              0.4.10                        0    conda-forge
postgresql                12.3                 he852019_3    conda-forge
poyo                      0.5.0              pyhd3eb1b0_0  
proj                      7.0.0                h45baca5_5    conda-forge
prompt-toolkit            3.0.17             pyh06a4308_0  
psutil                    5.8.0            py38h9ed2024_1  
ptyprocess                0.7.0              pyhd3eb1b0_2  
pycodestyle               2.6.0              pyhd3eb1b0_0  
pycparser                 2.20                       py_2  
pydocstyle                6.0.0              pyhd3eb1b0_0  
pyflakes                  2.2.0              pyhd3eb1b0_0  
pygments                  2.8.1              pyhd3eb1b0_0  
pylint                    2.7.4            py38hecd8cb5_1  
pyls-black                0.4.6                hd3eb1b0_0  
pyls-spyder               0.3.2              pyhd3eb1b0_0  
pynio                     1.5.5           py38h97f92f9_12    conda-forge
pyopenssl                 20.0.1             pyhd3eb1b0_1  
pyparsing                 2.4.7              pyhd3eb1b0_0  
pyqt                      5.9.2            py38h655552a_2  
pyrsistent                0.17.3           py38haf1e3a3_0  
pysocks                   1.7.1                    py38_1  
python                    3.8.8           h4e93d89_0_cpython    conda-forge
python-dateutil           2.8.1              pyhd3eb1b0_0  
python-jsonrpc-server     0.4.0                      py_0  
python-language-server    0.36.2             pyhd3eb1b0_0  
python-slugify            5.0.0              pyhd3eb1b0_0  
python.app                1.3              py38h5406a74_4    conda-forge
python_abi                3.8                      1_cp38    conda-forge
pytz                      2021.1             pyhd3eb1b0_0  
pyyaml                    5.4.1            py38h9ed2024_1  
pyzmq                     20.0.0           py38h23ab428_1  
qdarkstyle                3.0.2              pyhd3eb1b0_0  
qstylizer                 0.1.10             pyhd3eb1b0_0  
qt                        5.9.7                h8cf7e54_3    conda-forge
qtawesome                 1.0.2              pyhd3eb1b0_0  
qtconsole                 5.0.3              pyhd3eb1b0_0  
qtpy                      1.9.0                      py_0  
readline                  8.1                  h9ed2024_0  
regex                     2021.4.4         py38h9ed2024_0  
requests                  2.25.1             pyhd3eb1b0_0  
rope                      0.18.0                     py_0  
rtree                     0.9.7            py38hecd8cb5_1  
setuptools                52.0.0           py38hecd8cb5_0  
sip                       4.19.8           py38h0a44026_0  
six                       1.15.0           py38hecd8cb5_0  
snowballstemmer           2.1.0              pyhd3eb1b0_0  
sortedcontainers          2.3.0              pyhd3eb1b0_0  
sphinx                    3.5.3              pyhd3eb1b0_0  
sphinxcontrib-applehelp   1.0.2              pyhd3eb1b0_0  
sphinxcontrib-devhelp     1.0.2              pyhd3eb1b0_0  
sphinxcontrib-htmlhelp    1.0.3              pyhd3eb1b0_0  
sphinxcontrib-jsmath      1.0.1              pyhd3eb1b0_0  
sphinxcontrib-qthelp      1.0.3              pyhd3eb1b0_0  
sphinxcontrib-serializinghtml 1.1.4              pyhd3eb1b0_0  
spyder                    5.0.1            py38h50d1736_0    conda-forge
spyder-kernels            2.0.1            py38hecd8cb5_0  
sqlite                    3.35.4               hce871da_0  
testpath                  0.4.4              pyhd3eb1b0_0  
text-unidecode            1.3                        py_0  
textdistance              4.2.1              pyhd3eb1b0_0  
three-merge               0.1.1              pyhd3eb1b0_0  
tiledb                    1.7.7                h84aa2a7_2    conda-forge
tinycss                   0.4             pyhd3eb1b0_1002  
tk                        8.6.10               hb0a8c7a_0  
toml                      0.10.2             pyhd3eb1b0_0  
tornado                   6.1              py38h9ed2024_0  
traitlets                 5.0.5              pyhd3eb1b0_0  
typed-ast                 1.4.2            py38h9ed2024_1  
typing_extensions         3.7.4.3            pyha847dfd_0  
tzcode                    2021a                h0d85af4_1    conda-forge
ujson                     4.0.2            py38h23ab428_0  
unidecode                 1.2.0              pyhd3eb1b0_0  
urllib3                   1.26.4             pyhd3eb1b0_0  
watchdog                  1.0.2            py38h9ed2024_1  
wcwidth                   0.2.5                      py_0  
webencodings              0.5.1                    py38_1  
wheel                     0.36.2             pyhd3eb1b0_0  
whichcraft                0.6.1              pyhd3eb1b0_0  
wrapt                     1.12.1           py38haf1e3a3_1  
wurlitzer                 2.1.0            py38hecd8cb5_0  
xerces-c                  3.2.2             h8f8adb3_1004    conda-forge
xz                        5.2.5                h1de35cc_0  
yaml                      0.2.5                haf1e3a3_0  
yapf                      0.31.0             pyhd3eb1b0_0  
zeromq                    4.3.4                h23ab428_0  
zipp                      3.4.1              pyhd3eb1b0_0  
zlib                      1.2.11               h1de35cc_3  
zstd                      1.4.8                h62961b2_0    conda-forge

Any guidance that may be provided for getting Nio to properly import would be greatly appreciated! Thank you!

Meteodan commented 3 years ago

@carlspangrude, I'm having this same problem. I noticed that you closed this issue. Does that mean you solved it? If so, how?