Open sporella opened 6 months ago
Hi, thanks for letting us know about this, I'll take a look into this. We had to update the Dockerfile recently so this is probably from those changes. Just to double check you're using the wrfhydro/dev:base
image and trying to build the current WRF-Hydro main branch? If the setup is different please let us know, thanks
Hi, thanks for your answer. My workflow uses version 5.1.1. I tested it also with version 5.2.0 and I had the same issue
Hi, so I ran the newer Docker container and the issue is that the apt-get
installation installs the NetCDF library in a different path than the previous method. You can use the command $ nf-config --flibs
to see the command line argument to point to the library. From there you can double check the path to add the library location with ls
.
docker@642d30d31452:~/wrf_hydro_nwm_public/src/Run$ ls /usr/local/lib/
libfmpich.so libmpi.so.12.3.1 libmpicxx.la libmpifort.la libnetcdf.a libnetcdf.so.19.2.2 libnetcdff.so.7
libmpi.a libmpich.so libmpicxx.so libmpifort.so libnetcdf.la libnetcdff.a libnetcdff.so.7.2.0
libmpi.la libmpichcxx.so libmpicxx.so.12 libmpifort.so.12 libnetcdf.settings libnetcdff.la libopa.so
libmpi.so libmpichf90.so libmpicxx.so.12.3.1 libmpifort.so.12.3.1 libnetcdf.so libnetcdff.settings pkgconfig
libmpi.so.12 libmpicxx.a libmpifort.a libmpl.so libnetcdf.so.19 libnetcdff.so python3.10
Then by adding the path to the environment variable LD_LIBRARY_PATH
the runtime will know where to look to include it. The following command should work for this Docker image:
$ export LD_LIBRARY_PATH=/usr/local/lib/:$LD_LIBRARY_PATH
Hi, the command above solves the issue! Thanks!
Hello:
I had a functional workflow with the wrfhydro/dev:base image two years ago. I'm using the model again, but I have this error message:
error while loading shared libraries: libnetcdf.so.19: cannot open shared object file: No such file or directory
I exported the netcdf path and compile again, but now I have this error:
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
My folder is a simple test case that worked with the old version of the image. What I'm missing?
Thanks!