pip ratarmount and "!ratarmount" in the Jupiter notebook...

NCAR / xtar

Reading netCDF tar archives with xarray/zarr

MIT License

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pip ratarmount and "!ratarmount" in the Jupiter notebook... #3

Closed tinaok closed 4 years ago

tinaok commented 4 years ago

Hi @andersy005 , @kmpaul https://github.com/tinaok/xtar/blob/master/notebooks/tar-netcdf-HPCrealdata.ipynb I was trying with NFS disk space on our HPC system. ratarmount installed in my conda environment but can not access; may be I missunderstanding something?

As you can see, I installed libfuse in the same conda environment.

andersy005 commented 4 years ago

Hi @tinaok,

In the notebook, I am noticing that your default shell is /bin/sh

/bin/sh: ratarmount: command not found
CPU times: user 4 ms, sys: 4 ms, total: 8 ms
Wall time: 165 ms

From your regular terminal, what is the output of echo $SHELL?

andersy005 commented 4 years ago

Unless /bin/sh links to bash on your system, you may want to use bash and see if the problem goes away.

tinaok commented 4 years ago

Thanks for your quick reply @andersy005 yes, you are right is csh !echo $SHELL /bin/csh I gave full path of ratermount, and it works. (not so pretty though..) I'll update my repo