gene gene interactions from biogrid/ctd

NCATS-Gamma / robokop

Master UI for ROBOKOP

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gene gene interactions from biogrid/ctd #394

Open cbizon opened 5 years ago

cbizon commented 5 years ago

BioGrid has gene/gene (protein/protein interactions). CTD is exposing these interactions. Given that we have a CTD api, getting these relations from there is probably the way to go in terms of bringing in gene/genes.

cbizon commented 5 years ago

We're not currently smart bagging gene-gene though...

cbizon commented 5 years ago

Note on BioGrid:

P0C0L4 is C4A, and P0C0L5 is C4B (complement 4a and 4b). They're different genes, and they have different HGNC identifiers, and different BioGrid entries (107181 and 107182). BioGrid appears to link to the correct uniprots from its side, but for some reason, uniprot links to both 1 and 2 from P0C0L4, so that now 107182 is linked to both of these uniprots from the uniprot side.