Vet suitability of Ros for M2M

[stevencox]

Design (or reuse) a workflow suitable for a drug repurposing scenario.

[stevencox]

Use Case:

The Man to Molecule to man projects seeks to vet novel drug repurposing hypotheses using semantic web techniques and biomedical data sources. It will use Ros to produce and analyze knowledge graphs. This indicates a few basic things Ros will need to add. There's also work to be done identifying the exact interface - where Ros ends and M2M proper begins.

Graph Generation

We'll develop a set of workflows to produce patterns of interest to the M2M team. The first of these is drug->gene->disease graphs for lots of values. As part of this, we'll

• Add a capability to read lots of argument sets from a CSV file and invoke Ros repeatedly. This part is largely implemented but needs testing and a unit test.

• Make this capability should be natively concurrent. This is to be done.

Composing Graphs

The results of the multiple workflow runs will be joined into a single result graph.

Node Embeddings

And that graph will be used to build a node embedding model with Node2Vec.

[stevencox]

First steps.