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NCATS-Tangerine / translator-knowledge-beacon

NCATS Translator Knowledge Beacon Application Programming Interface plus Sample code
MIT License
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Fill out evidence for pubmed articles #56

Open lhannest opened 5 years ago

lhannest commented 5 years ago

I just came across this endpoint: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id=22733540&retmode=json from https://www.ncbi.nlm.nih.gov/pmc/tools/get-metadata/, which gives information such as author names, publication title, journal name, volume, issue, pages, first (lead) author, last (senior) author, reference count, language, and exact matches (I see they have: pii, doi, pmc, mid, rid, eid, pmcid).

Currently in the beacons we're only displaying date, evidence type, id, name, and uri. It seems like we're missing out on information that could be relevant to weighting edges.

@cmungall @RichardBruskiewich should we expand the evidence properties in the beacons to include all of this?

lhannest commented 5 years ago

We can also download directly: https://www.ncbi.nlm.nih.gov/books/NBK3827/#pubmedhelp.How_to_Download_PubMed, though that may be infeasible.

lhannest commented 5 years ago

I've been told that the abstract would be ideal to have. Sometimes abstracts don't actually support the assertion, and this could be tested by reasoners more easily if their knowledge graphs include this.